Sequence Analyses
- Phylogeny Inference
- Model Selection
- Dating and Clocks
- Ancestral States
- Selection and Tests
- Sequence Alignment
Statistical Methods
- Maximum Likelihood
- Distance Methods
- Ordinary Least Squares
- Maximum Parsimony
- Composite Likelihood
- Bayesian
Powerful Visual Tools
- Alignment/Trace Editor
- Tree Explorer
- Data Explorers
- Legend Generator
- Gene Duplication Wizard
- Timetree Wizard