Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Trace Data File Viewer/Editor
Web Browser & Data Miner
Text Editor & Utilities
Building Sequence Alignments
Introduction to Alignment Explorer
A Tutorial on Sequence Alignment
Aligning coding sequences via protein sequences
MUSCLE
CLUSTALW
BLAST
Menu Items in the Alignment Explorer
Toolbars in Alignment Explorer
Alignment Menu
Display Menu
Edit Menu
Data Menu
Search Menu
Sequencer Menu
Web Menu
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References
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