Copyright
Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Citing MEGA in Publications
Part I: Getting Started
Installing MEGA
Features & Support
A Walk Through MEGA
Introduction
Creating Multiple Sequence Alignments
Estimating Evolutionary Distances from Nucleotide Sequences
Constructing Trees and Selecting OTUs from Nucleotide Sequences
Tests of the Reliability of a Tree Obtained
Working With Genes and Domains
Test of Positive Selection
Managing Taxa With Groups
Computing Statistical Quantities for Nucleotide Sequences
Constructing Trees from Distance Data
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References
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