Amino Acid

Amino acid sequences are compared residue-by-residue.  These distances can be computed for protein sequences and protein-coding nucleotide sequences.  In the latter case, protein-coding nucleotide sequences are automatically translated using the selected genetic code table.

      No. of differencesHC_No_of_differences_Amino_acids>Main

      p-distanceHC_p_distance_Amino_acids

      Poisson Model

          with Rate Uniformily Among SitesHC_Poisson_Correction_distance

          with Rate Variation Among SitesHC_Gamma_distance_Amino_acids

        Equal Input Model

          with Rate Uniformity and Pattern HomogeneityHC_Equal_Input_Model

          with Rate Variation Among SitesHC_Equal_Input_Model_Gamma

          with Pattern Heterogeneity Between LineagesHC_Equal_Input_Model_Heterogeneous_Patterns

          with Rate Variation and Pattern HeterogeneityHC_Equal_Input_Model_Gamma_rates_and_Heterogeneous_Patterns

      Dayhoff and JTT Models

          with Rate Uniformity Among SitesHC_Dayhoff_Model

          with Rate Variation Among SitesHC_Dayhoff_and_JTT_distances_Gamma_rates