Converting PHYLIP non-interleaved format
While otherwise similar to the PHYLIP interleaved format, this format is not interleaved. For example:
0 0 I
G019uabh ATACATCATA ACACTACTTC CTACCCATAA GCTCCTTTTA ACTTGTTAAA
GTCTTGCTTG AATTAAAGAC TTGTTTAAAC ACAAAAATTT AGAGTTTTAC
TCAACAAAAG TGATTGATTG ATTGATTGAT TGATTGATGG TTTACAGTAG
GACTTCATTC TAGTCATTAT AGCTGCTGGC AGTATAACTG GCCAGCCTTT
AATACATTGC TGCTTAGAGT CAAAGCATGT ACTTAGAGTT
G028uaah CATAAGCTCC TTTTAACTTG TTAAAGTCTT GCTTGAATTA AAGACTTGTT
TAAACACAAA ATTTAGACTT TTACTCAACA AAAGTGATTG ATTGATTGAT
TGATTGATTG ATGGTTTACA GTAGGACTTC ATTCTAGTCA TTATAGCTGC
TGGCAGTATA ACTGGCCAGC CTTTAATACA TTGCTGCTTA GAGTCAAAGC
ATGTACTTAG AGTTGGTATG ATTTATCTTT TTGGTCTTCT
This file would be converted to MEGA format as follows:
#mega
Title: infile.phylip2
#G019uabh
ATACATCATA ACACTACTTC CTACCCATAA GCTCCTTTTA ACTTGTTAAA
GTCTTGCTTG AATTAAAGAC TTGTTTAAAC ACAAAAATTT AGAGTTTTAC
TCAACAAAAG TGATTGATTG ATTGATTGAT TGATTGATGG TTTACAGTAG
GACTTCATTC TAGTCATTAT AGCTGCTGGC AGTATAACTG GCCAGCCTTT
AATACATTGC TGCTTAGAGT CAAAGCATGT ACTTAGAGTT
#G028uaah
CATAAGCTCC TTTTAACTTG TTAAAGTCTT GCTTGAATTA AAGACTTGTT
TAAACACAAA ATTTAGACTT TTACTCAACA AAAGTGATTG ATTGATTGAT
TGATTGATTG ATGGTTTACA GTAGGACTTC ATTCTAGTCA TTATAGCTGC
TGGCAGTATA ACTGGCCAGC CTTTAATACA TTGCTGCTTA GAGTCAAAGC
ATGTACTTAG AGTTGGTATG ATTTATCTTT TTGGTCTTCT