Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
    How do I prevent the "MEGA Update Available" message showing up
    How can I ignore the current update available messag in MEGA's main window
    Computing statistics on only highlighted sites in Data Explorer
    Finding number of sites in pairwise comparisons
    Get more information about the codon based Z-test for selection
    Menus in MEGA are so short, where are all the options?
    Writing only 4-fold degenerate sites to an output file
    Why can't I display branch lengths for a bootstrap consensus tree?
    Divergence Times in the Outgroup Cluster are not Visible
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References