Keywords for Command Statements (Genes/Domains)

 

Command

Setting

Remark

Example

Domain

A name

This instruction defines a domain with the given name

Domain=first_exon

Gene

A name

This instruction defines a gene with the given name

Gene=cytb

Property

Exon, Intron,

Coding,

Noncoding,

and End.

This instruction specifies the protein-coding attribute for a domain. Keywords Exon and Coding are synonymous; similarly Intron and Noncoding are synonymous. End specifies the domain in which the given name has ended.

Property=cytb

CodonStart

A number

This instruction specifies the site where the next 1st-codon position will be found in a protein-coding domain.

CodonStart=2