Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
    Computing Basic Statistical Quantities for Sequence Data
    Computing Evolutionary Distances
       Distance Models
          Introduction
          Nucleotide Substitution Models
          Amino Acid Substitution Models
          Synonymouse and Nonsynonymous Substitution Models
             Nei-Gojobori Method
             Modified Nei-Gojobori Method
             Li-Wu-Luo Method
             Pamilo-Bianchi-Li Method
             Kumar Method
       Specifying Distance Estimation Options
    Constructing Phylogenetic Trees
    Constructing Time Trees
    Handling Missing Data and Alignment Gaps
    Tests of Selection
    Exploring the impact of nsSNVs
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References