Molecular Evolution and Phylogenetics

Nei M, Kumar S (2000)
Oxford University Press (333 pp.)

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Phylogenetic Trees Made Easy: A How-To Manual, Fifth Edition

Hall B (2017)
Sinauer Associates Inc, Sunderland (282 pp.)

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MEGA: Molecular Evolutionary Genetics Analysis version 1.01

Kumar S, Tamura K, Nei M (1993)
The Pennsylvania State University (135 pp.)

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MEGA Software Celebrates Silver Anniversary

Caspermeyer J (2018)
Molecular Biology and Evolution 35:1558-1560

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Building Phylogenetic Trees from Molecular Data With MEGA

Hall B (2013)
Molecular Biology and Evolution 30:1229-1235

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Estimating TimeTrees with MEGA and the TimeTree Resource

Mello B (2018)
Molecular Biology and Evolution 35:2334-2342

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A Protocol for Diagnosing the Effect of Calibration Priors on Posterior Time Estimates: A Case Study for the Cambrian Explosion of Animal Phyla

Battistuzzi F, Billing-Ross P, Murillo O, Filipski A, Kumar S (2015)
Molecular Biology and Evolution 32:1907-1912

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Bootstrap and Rogue Identification Tests for Phylogenetic Analyses

Russo C, Selvatti A (2018)
Molecular Biology and Evolution 25:2327-2333

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Reliable Confidence Intervals for RelTime Estimates of Evolutionary Divergence Times

Tao Q, Tamura K, Mello B, and Kumar S (2020)
Molecular Biology and Evolution 37:280-290

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A new method for inferring timetrees from temporally sampled molecular sequences

Miura S, Tamura K, Tao Q, Huuki LA, Pond SLK, Priest J, Deng J, Kumar S (2020)
PLoS Computational Biology 16:24pp

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A machine learning method for detecting autocorrelation of evolutionary rates in large phylogenies

Tao Q, Tamura K, Battistuzzi F, Kumar S (2019)
Molecular Biology and Evolution 36:811-824

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Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates

Tamura K, Tao Q, Kumar S (2018)
Molecular Biology and Evolution 35:1770-1782

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RelTime relaxes the strict molecular clock throughout the phylogeny

Battistuzzi FU, Tao Q, Jones L, Tamura K, Kumar S (2018)
Genome Biology and Evolution 10:1631-1636

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On estimating evolutionary probabilities of population variants

Patel R and Kumar S (2019)
BMC Evolutionary Biology 19:133(14pp)

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