Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Computing Basic Statistical Quantities for Sequence Data
Computing Evolutionary Distances
Distance Models
Specifying Distance Estimation Options
Analysis Preferences
General Model Options
Bootstrap method to compute standard error of distance estimates
Constructing Phylogenetic Trees
Constructing Time Trees
Handling Missing Data and Alignment Gaps
Tests of Selection
Exploring the impact of nsSNVs
Identifying Gene Duplications
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References
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