Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
    Computing Basic Statistical Quantities for Sequence Data
    Computing Evolutionary Distances
    Constructing Phylogenetic Trees
    Constructing Time Trees
    Handling Missing Data and Alignment Gaps
    Tests of Selection
    Exploring the impact of nsSNVs
       Introduction
       MEGA-MDW Server
       MEGA-MD Windows
       Input Data
          MEGA-MD Input Data Overview
          Upload a text file with the coordinate information for all nsSNVs of interest
          Specify the coordinate information using the Sequence Data Explorer
       References
    Identifying Gene Duplications
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References