Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
    Trace Data File Viewer/Editor
    Web Browser & Data Miner
    Text Editor & Utilities
    Building Sequence Alignments
       Introduction to Alignment Explorer
       A Tutorial on Sequence Alignment
       Aligning coding sequences via protein sequences
       MUSCLE
       CLUSTALW
          About CLUSTALW
          CLUSTALW Options (DNA)
          CLUSTALW Options (Protein)
       BLAST
       Menu Items in the Alignment Explorer
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References