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Tajima
   Tajima's Test (Relative Rate)
   Tajima's Test of Neutrality
   Tajima-Nei distance
Tajima's Test
   Tajima's Test (Relative Rate)
   Tajima's Test of Neutrality
    Neutrality
Tajima-Nei
   Tajima-Nei distance
   Tamura (1992) Distance Could Not Be Computed
Tajima-Nei distance
Tajima-Nei Distance Could Not Be Computed
Tajima 1989
Tajima and Nei 1982
Tajima Nei distance Gamma rates
Tajima Nei Distance Gamma Rates and Heterogeneous patterns
Tajima Nei Distance Heterogeneous patterns
Takahashi and Nei 2000
Takezaki et al. 1995
Tamura
Tamura-Nei
   Tamura-Nei distance
   Tamura-Nei Distance Could Not Be Computed
   Tamura-Nei gamma distance
Tamura-Nei distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Tamura-Nei Distance Could Not Be Computed
Tamura-Nei distance Gamma rates and Heterogeneous patterns
Tamura-Nei distance Heterogeneous Patterns
Tamura-Nei gamma distance
Tamura 3-parameter distance
Tamura 3-parameter Gamma
Tamura 3 parameter Gamma rates and Heterogeneous patterns
Tamura 3 parameter Heterogeneous patterns
Tamura and Kumar 2002
Tamura et al. 2004
Tamura et al. 2007
Taxa
   Average Menu (in Distance Data Explorer)
   Average Menu (in Distance Matrix Explorer)
   Compute Between Groups Means
   Compute Net Between Groups Means
   Compute Within Groups Mean
   Data Menu (in sequence Data Explorer)
   Display Menu (in Distance Data Explorer)
   Display Menu (in Distance Matrix Explorer)
   Distance Data Explorer
   Distance Data Subset Selection
   Distance Matrix Explorer
   File Menu (in Distance Data Explorer)
   General Considerations (Distance Data Formats)
   Minimum Evolution
   Missing data or invalid distances in the matrix
   Monophyletic
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
   Rules for Taxa Names
   Sequence Data Explorer
   Sequence Data Subset Selection
   Setup/Select Taxa & Groups
   Setup/Select Taxa & Groups Dialog
   View Menu (in Tree Explorer)
   Writing Command Statements for Defining Groups of Taxa
    Adding
    categorize
    defining
    Defining Groups
    following
    Groups
       Average Menu (in Distance Data Explorer)
       Average Menu (in Distance Matrix Explorer)
       Compute Between Groups Means
       Compute Net Between Groups Means
       Compute Within Groups Mean
       Data Menu (in sequence Data Explorer)
       Distance Data Explorer
       Sequence Data Explorer
       Writing Command Statements for Defining Groups of Taxa
    hiding
    listing
    name
    number
       Distance Matrix Explorer
       Minimum Evolution
       Neighbor Joining (Construct Phylogeny)
       Neighbor-Joining (NJ) Method
    order
       Setup/Select Taxa & Groups Dialog
       View Menu (in Tree Explorer)
    selecting
       Distance Data Explorer
       Sequence Data Explorer
Taxa Names
    Rules
Taxa/Group Organizer
Taxa/Groups
Taxon
   Display Menu (in Distance Data Explorer)
   Display Menu (in Distance Matrix Explorer)
   Distance Data Explorer
   Distance Matrix Explorer
   Rules for Taxa Names
   Setup/Select Taxa & Groups Dialog
   Tree tab (in Options dialog box)
   View Menu (in Tree Explorer)
    including
    indicate
    manipulate
    Removing
    select
Taxon Iabel
Taxon Name tab
Technical Support
Test of Positive Selection
Tests | Codon-based Tests
   Codon Based Fisher's Exact Test
   Codon Based Z-Test (large sample)
    Selection
       Codon Based Fisher's Exact Test
       Codon Based Z-Test (large sample)
Tests | Interior Branch Test
Tests | Relative Rate Tests
   Relative Rate Tests
   Tajima's Test (Relative Rate)
Tests | Tajima's Test
    Neutrality
Tests menu
   Main MEGA Window
   Selection Menu
Tests of the Reliability of a Tree Obtained
Text Editor
   Copy (in Text Editor)
   Cut (in Text Editor)
   Exit Editor (in Text Editor)
   Find (in Text Editor)
   Find Again (in Text Editor)
   Font (in Text Editor)
   New (in Text Editor)
   Open (in Text Editor)
   Paste (in Text Editor)
   Print (in Text Editor)
   Replace (in Text Editor)
   Save (in Text Editor)
   Save As (in Text Editor)
   Undo (in Text Editor)
Text File Editor
Text Label
Threonine
Title
   Key Words
   MEGA Format
   Rules for Description Statement
   Rules for Title Statement
Title Statement
    Rules
Toolbars in Alignment Explorer
Topological distance
Trace Data File Viewer/Editor
Transition/transversion
   Analysis Preferences (Fisher's Exact Test)
   Basic Sequence Statistics
   Kimura 2-parameter distance
   Kimura gamma distance
   Modified Nei-Gojobori Method
   No. of differences (Nucleotide)
   p-distance (Nucleotide)
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Transitions + Transversions
   Jukes-Cantor distance
   Jukes-Cantor Gamma distance
   Kimura 2-parameter distance
   Kimura gamma distance
   No. of differences (Nucleotide)
   p-distance (Nucleotide)
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Translate/Untranslate
Transversional
   Kimura 2-parameter distance
   Kimura gamma distance
   Kumar Method
   Li-Wu-Luo Method
   No. of differences (Nucleotide)
   p-distance (Nucleotide)
   Pamilo-Bianchi-Li Method
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Transversions
   Kimura 2-parameter distance
   Kimura gamma distance
   No. of differences (Nucleotide)
   p-distance (Nucleotide)
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Tree
    Bifurcating
Tree Data
   Rules for Format Statement
   Tree Data
Tree Explorer
   Compute Menu (in Tree Explorer)
   File Menu (in Tree Explorer)
   Image Menu (in Tree Explorer)
   Information Box
   Options dialog box (in Tree Explorer)
   Subtree Menu (in Tree Explorer)
   Tree Explorer
   View Menu (in Tree Explorer)
Tree Explorer window
Tree Length
Tree tab
Tree/Branch Style
Treelength
Tryptophan
Txt
   Guide to Notations Used
   MEGA Format

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