p distance is found to be > 1
p-distance (Amino acids)
p-distance (Nucleotide)
Kumar Method
Pamilo-Bianchi-Li Method
Alignment Gaps and Sites with Missing Information
Analysis Preferences (Maximum Parsimony)
Analysis Preferences (Minimum Evolution)
Analysis Preferences (NJ/UPGMA)
Bootstrap Test of Phylogeny
Choose Model
Citing MEGA in Publications
Condensed Trees
Fitch and Margoliash 1967
Handling Gaps and Missing Data
Hillis and Bull 1993
Include Codon Positions
Include Labeled Sites
Maximum Parsimony (Construct Phylogeny)
MEGA Format
Minimum Evolution (Construct Phylogeny)
Models for estimating distances
Monophyletic
Phylogenetic Inference
Phylogeny Menu
Rzhetsky and Nei 1993
Select Preferences
Sourdis and Krimbas 1987
Sourdis and Nei 1988
Tateno et al. 1982
Minimum Evolution (Construct Phylogeny)
Phylogenetic Inference
Phylogenetic Inference
Sequence Data Explorer
Translate/Untranslate (in Sequence Data Explorer)
Main MEGA Window
Phylogeny Menu
Gamma distance (Amino acids)
Poisson Correction (PC) distance
Poisson Correction Failed because p > 0.99
Code Table Editor
Sequence Data Subset Selection
Exit
Print (in Text Editor)
File Menu (in Tree Explorer)
Printer Setup
Data Menu (in sequence Data Explorer)
Quit Data Viewer
File Menu (in Distance Data Explorer)
File Menu (in Distance Matrix Explorer)
Bootstrap Test of Phylogeny
Codon Based Z-Test (large sample)
Large Sample Tests of Selection
Data Explorer
Keywords for Format Statement (Sequence data)
Rules for Description Statement
Rules for Format Statement
Rules for Taxa Names
Rules for Title Statement
Exit
Save (in Text Editor)
File Menu (in Tree Explorer)
Image Menu (in Tree Explorer)
Save As (in Text Editor)
Distance Data Explorer
Distance Data Subset Selection
Sequence Data Explorer
Setup/Select Taxa & Groups Dialog
Distance Data Explorer
Sequence Data Explorer
Select Genetic Code Table
Select Genetic Code Table (in Sequence Data Explorer)
Analysis Preferences (Z-test of Selection)
Codon Based Fisher's Exact Test
Codon Based Z-Test (large sample)
Get more information about the codon based Z-test for selection
Large Sample Tests of Selection
Codon Based Fisher's Exact Test
Codon Based Z-Test (large sample)
Alignment Gaps and Sites with Missing Information
General Considerations (Sequence Data)
Input Data Format Dialog
Computing statistics on only highlighted sites in Data Explorer
Display Menu (in Sequence Data Explorer)
Export Data (in Sequence Data Explorer)
Highlight Menu (in Sequence Data Explorer)
Select Genetic Code Table (in Sequence Data Explorer)
Sequence Data Explorer
Setup/Select Genes & Domains (in Sequence Data Explorer)
Setup/Select Taxa & Groups (in Sequence Data Explorer)
Statistics Menu (in Sequence Data Explorer)
Translate/Untranslate (in Sequence Data Explorer)
Writing only 4-fold degenerate sites to an output file
Distance Data Explorer
Distance Matrix Explorer
Amino Acid Composition
Codon Usage
Nucleotide Composition
Nucleotide Pair Frequencies
Setup/Select Genes & Domains
Setup/Select Genes & Domains (in Sequence Data Explorer)
Setup/Select Genes & Domains Dialog
Setup/Select Taxa & Groups
Setup/Select Taxa & Groups (in Sequence Data Explorer)
Setup/Select Taxa & Groups Dialog
Branch tab (in Options dialog box)
Distance Data Explorer
Distance Matrix Explorer
Distance Data Explorer
Distance Matrix Explorer
Display Menu (in Distance Data Explorer)
Display Menu (in Distance Matrix Explorer)
Show Group Names
Alignment Gaps and Sites with Missing Information
Alignment Gaps and Sites with Missing Information
Finding number of sites in pairwise comparisons
Modified Nei-Gojobori Method
Nei-Gojobori Method
Sequence Data Explorer
Modified Nei-Gojobori Method
Nei-Gojobori Method
Distance Data Explorer
Distance Matrix Explorer
Sort Sequences
Sort Sequences by Group and Sequence Names
Sort Sequences by Group Name
Display Menu (in Distance Data Explorer)
Display Menu (in Distance Matrix Explorer)
Codon Based Z-Test (large sample)
Large Sample Tests of Selection
Computing statistics on only highlighted sites in Data Explorer
Statistics Menu (in Sequence Data Explorer)
Distance Data Explorer
Sequence Data Explorer
Text File Editor and Format Converter
Finding number of sites in pairwise comparisons
Get more information about the codon based Z-test for selection
Codon Based Z-Test (large sample)
Large Sample Tests of Selection