Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
    Computing Basic Statistical Quantities for Sequence Data
    Computing Evolutionary Distances
    Constructing Phylogenetic Trees
       General Overview
       NJ/UPGMA Methods
       Minimum Evolution Method
       Maximum Parsimony (MP) Method
       Maximum Likelihood (ML) Method
          Analysis Options
          Heuristic Search
       Statistical Tests of a Tree Obtained
       Molecular Clock Tests
       Ancestral States
    Constructing Time Trees
    Handling Missing Data and Alignment Gaps
    Tests of Selection
    Exploring the impact of nsSNVs
    Identifying Gene Duplications
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References