Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
    Computing Basic Statistical Quantities for Sequence Data
    Computing Evolutionary Distances
    Constructing Phylogenetic Trees
       General Overview
       NJ/UPGMA Methods
       Minimum Evolution Method
       Maximum Parsimony (MP) Method
       Maximum Likelihood (ML) Method
       Statistical Tests of a Tree Obtained
          General Comments on Statistical Tests
          Condensed Trees
          Interior Branch Tests
          Bootstrap Tests
       Molecular Clock Tests
       Ancestral States
    Constructing Time Trees
    Handling Missing Data and Alignment Gaps
    Tests of Selection
    Exploring the impact of nsSNVs
    Identifying Gene Duplications
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Appendix C: Error Messages
Glossary
References