Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
    Main MEGA Menus
       Main MEGA Window
       Data Menu
       Distances Menu
          Overview
          Neighbor-Joining (NJ)
          Minimum Evolution (ME)
          UPGMA
          Compute Pairwise
          Compute Overall Mean
          Compute Within Groups Mean
          Compute Net Between Groups Means
          Compute Between Groups Means
          Compute Sequence Diversity
          Tajima's Relative Rate Test
          Tajima's Test of Neutrality
          Codon Based Z-Test (large sample)
          Codon Based Fisher's Exact Test
          Compute MCL Substitution Matrix
          Compute MCL Transversion/Transition bias
          Analyze User Tree by Least Squares
       Likelihood
       Phylogeny Menu
       Alignment Menu
       Help Menu
       Parsimony
    MEGA Dialogs
Appendix C: Error Messages
Glossary
References