Disclaimer
Preface
Acknowledgements
MEGA Software Development Team
Copyright
Citing MEGA in Publications
Part I: Getting Started
Part II: Assembling Data for Analysis
Part III: Input Data Types and File Format
Part IV: Evolutionary Analysis
Part V: Visualizing and Exploring Data and Results
Appendix A: Frequently Asked Questions
Appendix B: Main Menu Items and Dialogs Reference
Main MEGA Menus
Main MEGA Window
Data Menu
Distances Menu
Overview
Neighbor-Joining (NJ)
Minimum Evolution (ME)
UPGMA
Compute Pairwise
Compute Overall Mean
Compute Within Groups Mean
Compute Net Between Groups Means
Compute Between Groups Means
Compute Sequence Diversity
Tajima's Relative Rate Test
Tajima's Test of Neutrality
Codon Based Z-Test (large sample)
Codon Based Fisher's Exact Test
Compute MCL Substitution Matrix
Compute MCL Transversion/Transition bias
Analyze User Tree by Least Squares
Likelihood
Phylogeny Menu
Alignment Menu
Help Menu
Parsimony
MEGA Dialogs
Appendix C: Error Messages
Glossary
References
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