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   Citing MEGA in Publications
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    Sites
Hillis et al. 1996
Histidine

ID
   Sort Sequences by Group and Sequence Names
   Sort Sequences by Group Name
   Sort Sequences By Sequence Name
Identical
Identical Symbol
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Importing Data From Other Formats
Inapplicable Computation Requested
Include Codon Positions
Include Labeled Sites
Include Sites Option
Include/exclude
Include/Exclude taxa
   Distance Data Explorer
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   Setup/Select Taxa & Groups Dialog
Including
   Citing MEGA in Publications
   Importing Data From Other Formats
   View Menu (in Tree Explorer)
    CLUSTAL
    MEGA
    taxon
Inclusion/exclusion of codon positions/labeled sites
   Analysis Preferences (Distance Computation)
   Analysis Preferences (Fisher's Exact Test)
   Analysis Preferences (Maximum Parsimony)
   Analysis Preferences (Minimum Evolution)
   Analysis Preferences (NJ/UPGMA)
   Analysis Preferences (Z-test of Selection)
Inconsistencies
   Open Data
   Reporting Bugs
Incorrect Command Used
Increase/decrease
   Distance Data Explorer
   Distance Matrix Explorer
Indel
   Alignment Gaps and Sites with Missing Information
   Keywords for Format Statement (Sequence data)
Independents node
Index
Information Box
Input Data Format Dialog
Insert genes or domains
Insertions/deletions
Installing MEGA
Intergenic domains
Interior Branch Test
Interpopulational diversity
    estimate
Introduction to Walk Through MEGA
Intron
   Keywords for Command Statements (Genes/Domains)
   Keywords for Format Statement (Sequence data)
   Setup/Select Genes & Domains Dialog
Intron Property
   Writing Command Statements for Defining Genes and Domains
   Writing Command Statements for Defining Groups of Taxa
Invalid distances
Invalid special symbol
Isoleucine
IUPAC single letter codes

Jones et al. 1992
Jukes-Cantor
   Jukes-Cantor Distance Failed
   Modified Nei-Gojobori Method
   Nei-Gojobori Method
   Tajima-Nei distance
Jukes-Cantor Correction Failed
Jukes-Cantor distance
Jukes-Cantor Gamma distance

Keywords
   Keywords for Command Statements (Genes/Domains)
   Keywords for Format Statement (Distance data)
   Keywords for Format Statement (Sequence data)
    Command Statements
    Format Statement
       Keywords for Format Statement (Distance data)
       Keywords for Format Statement (Sequence data)
Kimura-2-parameter-Gamma distance
Kimura 2-parameter distance
Kimura gamma distance
Kumar Method
Kumar@megasoftware.net
   Copyright
   Using MEGA in the Classroom

Labels Tab
Large Sample Tests of Selection
Leaf taxa
Leucine
Level of CP
Li-Wu-Luo
Li-Wu-Luo Method
Li 1993
Li 1997
Linux
Listing
    taxa
LogDet Distance Could Not Be Computed
Look In

Main MEGA Window
Managing Taxa With Groups
Manipulating tree aspects
Marker Graphics
MatchChar
Matrix
Matrix Explorer
Matrix Format
Max-mini branch-and-bound search
Maximum-likelihood
   Condensed Trees
   Maximum Parsimony (MP) Method
Maximum Composite Likelihood
   Maximum Composite Likelihood
   Maximum Composite Likelihood Method
Maximum Composite Likelihood Gamma Rates and Heterogeneous Patterns
Maximum Composite Likelihood Heterogeneous Patterns
Maximum Composite Likelihood Method
Maximum Composite_Likelihood Gamma
Maximum Parsimony
   Analysis Preferences (Maximum Parsimony)
   Maximum Parsimony (Construct Phylogeny)
   Maximum Parsimony (MP) Method
ME
   Condensed Trees
   Minimum Evolution
   Minimum Evolution (Construct Phylogeny)
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
ME Tree Tab
Mean Diversity
    Entire Population
    Interpopulational Diversity
MEG
MEGA
    citing
    classroom use
    exiting
    Installing
MEGA Format
MEGA Software Development Team
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Menus
Methionine
Microsoft Word
Midpoint
Minimum Evolution
   Analysis Preferences (Minimum Evolution)
   Minimum Evolution
   Minimum Evolution (Construct Phylogeny)
Minimum Evolution Construct Phylogeny
Missing
   Input Data Format Dialog
   Missing data or invalid distances in the matrix
    data
    Data
Missing Data
Missing Information
   Alignment Gaps and Sites with Missing Information
   Alignment Gaps and Sites with Missing Information
Model button
Models
   Models for estimating distances
   Tajima-Nei distance
    Nei
Modified Nei-Gojobori
Modified Nei-Gojobori Method
Molecular sequences
Monophyletic
MP
   Alignment Gaps and Sites with Missing Information
   Close-Neighbor-Interchange (CNI)
   Condensed Trees
   Maximum Parsimony (Construct Phylogeny)
   Maximum Parsimony (MP) Method
    constructing
    find
       Close-Neighbor-Interchange (CNI)
       Maximum Parsimony (Construct Phylogeny)
    produce
MP Tree Tab
    Options dialog
MP Trees
Multifurcating tree

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