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Keywords
   Keywords for Command Statements (Genes/Domains)
   Keywords for Format Statement (Distance data)
   Keywords for Format Statement (Sequence data)
Keywords:Command Statements
Keywords:Format Statement
   Keywords for Format Statement (Distance data)
   Keywords for Format Statement (Sequence data)
Kimura 2-parameter distance
Kimura gamma distance
Kimura-2-parameter-Gamma distance
Kumar et al. 2012
Kumar et al. EvoD 2012
Kumar Method
Kumar@megasoftware.net
   Copyright
   Using MEGA in the Classroom

Labels Tab
Large Sample Tests of Selection
Le and Gascuel 2008
Leaf taxa
Leucine
Level of CP
Li 1993
Li 1997
Li-Wu-Luo
Li-Wu-Luo Method
Linux
Listing
Listing:taxa
LogDet Distance Could Not Be Computed
Look In

Main MEGA Window
Managing Taxa With Groups
Manipulating tree aspects
Marker Graphics
MatchChar
Matrix
Matrix Explorer
Matrix Format
Max-mini branch-and-bound search
Maximum Composite Likelihood
   Maximum Composite Likelihood
   Maximum Composite Likelihood Method
Maximum Composite Likelihood Gamma Rates and Heterogeneous Patterns
Maximum Composite Likelihood Heterogeneous Patterns
Maximum Composite Likelihood Method
Maximum Composite_Likelihood Gamma
Maximum Likelihood ML
Maximum Parsimony
   Analysis Preferences (Maximum Parsimony)
   Maximum Parsimony (Construct Phylogeny)
   Maximum Parsimony (MP) Method
Maximum-likelihood
   Condensed Trees
   Maximum Parsimony (MP) Method
ME
   Condensed Trees
   Minimum Evolution
   Minimum Evolution (Construct Phylogeny)
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
ME Tree Tab
Mean Diversity
Mean Diversity:Entire Population
Mean Diversity:Interpopulational Diversity
MEG
Mega Basics
MEGA Format
MEGA Saved Sessions
MEGA Software Development Team
MEGA-CC
MEGA:citing
MEGA:classroom use
MEGA:exiting
MEGA:Installing
Menu bar
Menus
Methionine
Microsoft Word
Midpoint
Minimum Evolution
   Analysis Preferences (Minimum Evolution)
   Minimum Evolution
   Minimum Evolution (Construct Phylogeny)
Minimum Evolution Construct Phylogeny
Missing
   Input Data Format Dialog
   Missing data or invalid distances in the matrix
Missing Information
   Alignment Gaps and Sites with Missing Information
   Alignment Gaps and Sites with Missing Information
Missing:Data
   Input Data Format Dialog
   Missing data or invalid distances in the matrix
Models
   Models for estimating distances
   Tajima-Nei distance
Models:Nei
Modified Nei-Gojobori
Modified Nei-Gojobori Method
Molecular Clock Test ML
Molecular sequences
Monophyletic
MP
   Alignment Gaps and Sites with Missing Information
   Close-Neighbor-Interchange (CNI)
   Condensed Trees
   Maximum Parsimony (Construct Phylogeny)
   Maximum Parsimony (MP) Method
MP Tree Tab
MP Tree Tab:Options dialog
MP Trees
MP:constructing
MP:find
   Close-Neighbor-Interchange (CNI)
   Maximum Parsimony (Construct Phylogeny)
MP:produce
Multifurcating tree
MUSCLE Options DNA
MUSCLE Options Protein
Mutation Detail View
Mutation Explorer
myPEG Overview

Name
   Code Table Editor
   Display Menu (in Distance Matrix Explorer)
   Distance Data Explorer
   Distance Matrix Explorer
   Open Data
Name:sequences/groups
   Distance Data Explorer
   Distance Matrix Explorer
Name:taxa
NCBI
Nearest-Neighbor-Interchange NNI
Nei et al. 1998
Nei-Gojobori
   Computing Statistical Attributes (Genetic Code)
   Modified Nei-Gojobori Method
Nei-Gojobori Method
Neighbor Joining
Neighbor Joining Construct Phylogeny
Neighbor-Joining
Net Between Groups
   Average Menu (in Distance Data Explorer)
   Average Menu (in Distance Matrix Explorer)
Neutrality
Neutrality:Tajima's Test
Neutrality:Tests | Tajima's Test
New
Newick Format
Nex
Nexus/PAUP
NJ
   Condensed Trees
   Minimum Evolution
   Minimum Evolution (Construct Phylogeny)
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
NJ/UPGMA
Noncoding
   Export Data (in Sequence Data Explorer)
   Keywords for Command Statements (Genes/Domains)
   Keywords for Format Statement (Sequence data)
   Writing Command Statements for Defining Genes and Domains
   Writing Command Statements for Defining Groups of Taxa
Nonsynonymous
   Analysis Preferences (Fisher's Exact Test)
   Analysis Preferences (Z-test of Selection)
   Codon Based Z-Test (large sample)
   Computing Statistical Attributes (Genetic Code)
   Fisher's Exact Test Has Failed
   Jukes-Cantor Distance Failed
   Kumar Method
   Large Sample Tests of Selection
   Li-Wu-Luo Method
   Modified Nei-Gojobori Method
   Nei-Gojobori Method
   Pamilo-Bianchi-Li Method
Nonsynonymous site
   Codon Based Fisher's Exact Test
   Codon Based Z-Test (large sample)
   Kumar Method
   Large Sample Tests of Selection
   Li-Wu-Luo Method
   Pamilo-Bianchi-Li Method
Notations Used
Notepad
NSeqs
   Keywords for Format Statement (Distance data)
   Keywords for Format Statement (Sequence data)
NSites
NT
NTaxa
   Keywords for Format Statement (Distance data)
   Keywords for Format Statement (Sequence data)
Nucleotide
Nucleotide Composition
Nucleotide Pair Frequencies
   Nucleotide Pair Frequencies
   Nucleotide Pair Frequencies
Nucleotide-by-nucleotide
Number
   Analysis Preferences (Fisher's Exact Test)
   Codon Based Z-Test (large sample)
   Computing Statistical Attributes (Genetic Code)
   Distance Matrix Explorer
   Finding number of sites in pairwise comparisons
   Fisher's Exact Test Has Failed
   Kimura 2-parameter distance
   Kimura gamma distance
   Kumar Method
   Large Sample Tests of Selection
   Li-Wu-Luo Method
   Minimum Evolution
   Modified Nei-Gojobori Method
   Nei-Gojobori Method
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
   Pamilo-Bianchi-Li Method
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance
Number:0-fold
   Kumar Method
   Li-Wu-Luo Method
   Pamilo-Bianchi-Li Method
Number:4-fold
   Kumar Method
   Li-Wu-Luo Method
   Pamilo-Bianchi-Li Method
Number:codons
Number:Finding
Number:nonsynonymous
   Codon Based Z-Test (large sample)
   Computing Statistical Attributes (Genetic Code)
   Fisher's Exact Test Has Failed
   Kumar Method
   Large Sample Tests of Selection
   Li-Wu-Luo Method
   Modified Nei-Gojobori Method
   Nei-Gojobori Method
   Pamilo-Bianchi-Li Method
Number:Sites
   Modified Nei-Gojobori Method
   Nei-Gojobori Method
Number:taxa
   Distance Matrix Explorer
   Minimum Evolution
   Neighbor Joining (Construct Phylogeny)
   Neighbor-Joining (NJ) Method
Number:transversional
   Kimura 2-parameter distance
   Kimura gamma distance
   Tamura 3-parameter distance
   Tamura-Nei distance
   Tamura-Nei gamma distance

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